NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold B570J40625_100081332

Scaffold B570J40625_100081332


Overview

Basic Information
Taxon OID3300002835 Open in IMG/M
Scaffold IDB570J40625_100081332 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4181
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.099444Long. (o)-89.404444Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004233Metagenome447Y
F013887Metagenome / Metatranscriptome267Y
F014613Metagenome / Metatranscriptome261Y
F074582Metagenome / Metatranscriptome119N

Sequences

Protein IDFamilyRBSSequence
B570J40625_1000813321F004233N/AVSDLRQIVRSAGSSAVITSLRITAIGALAKTQRAIFDGNLAEGLDGAQITDLLDDLLLSSWNELPPAETWATYEPATEIWSDAGDIGLGEIDAGEYTMASRQITDSVIYPIINQIASSALGYMYEDANGNINYADASHRQDYLLANGYTDLDASHAIASGIGIIQRQGDLSNKIIMDYGNNFNSSYTAQDLGSQAEYGLFAEQFNSYLKNSADVEDVADRLIQLRAWPRNTFQSITFALQSPEIDNADRDALLNIFMGQPVRITNLPLNILGGEFTGFIEGWTFNASVSGLSVTFLATPTEFSAFAQQWAQVNAAESWNSVLNTLEWQDAIGVIS*
B570J40625_10008133210F074582GGAGVSDTQKSLNEWLESAGDTLFDRGIEYGDPRHNLLRIFKISKALGIQLRDPSDLALIAIAT
B570J40625_1000813323F013887AGGMSYLVKAIKKLKPSAEFSFTEDDYSTIKWDILEGKAPTKTEIDAAIEEVKADEAQAELDKAAKKATAEAKLVALGLDLDDLRALGL*
B570J40625_1000813329F014613GAGMFPNLSDTQVFAITIGVPFFGLYLWALWSSAKAKAFNEGYKRGRASVRYTEIIK*
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Institute for Fundamental Biomedical Research
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