Scaffold B570J40625_100079896

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100079896
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4238
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Pirellula → unclassified Pirellula → Pirellula sp. SH-Sr6A (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018127	Metagenome / Metatranscriptome	236	Y
F029017	Metagenome / Metatranscriptome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_1000798961	F018127	N/A	VTMAKKENNWIPWAIIAGLVLYAMAQQPKEGGDPSTAAAVSAAKQTIPNIRAAYREAFLDAAKGIEDGTIKDQEAWTEFIRQNAGARQRDALDEVYEAIDKLKLPVTFAGKEKELAEINRQIARAW*
B570J40625_1000798962	F029017	GAGG	MDELGFVTWKLVQLVLWAGPLGVGAFLAVLAGAAFYAGYSMRPKRTDKPMGNVKMDHIKYDILPDGTLGPGDPRGLEGPE*