Scaffold B570J40625_100079346

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100079346
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4259
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007751	Metagenome / Metatranscriptome	345	Y
F010084	Metagenome	308	Y
F010836	Metagenome / Metatranscriptome	298	Y
F011075	Metagenome / Metatranscriptome	295	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_1000793463	F010084	N/A	MDITEEVISHFKNNIKTKIGVSSIDGVGVIAIRDIKQYEEVFPIWDYETGIYIIPTDRLDEIPNEVVELLDMYFINDECGYKIIRLFKGLNFLFHGYSYCNSAWPDENKVNITNNGIAMRDIKAGEEILEWYNENINLDKSK*
B570J40625_1000793465	F011075	N/A	MNSFETNLGIIVGSHLNDAMIEVSVNPQLAKKRLKFVKALTFFNEDLTKGVTDDYCDWLWNELFENQRWGGPYIKGTNYETK*
B570J40625_1000793467	F010836	N/A	MATSNFHNVNASAIFAVPLENDFDYEDLVDNLKSELSNDSDYVDFGKTDPNELRSFPSRTLGSIRKYHQYKDFYIEVCVTPVIRSGYYSGCNLDWNVDYLINGDVSYDSPDFYIDDIAYCGNLSKSAATKYAKFAEKKAEKLKNEIVEQLESIYNNYSDRYGVTAVFSNGETIYHKL*
B570J40625_1000793468	F007751	N/A	MNQIEELKSVIGKDVSQNQSPTCRARLVSVGKANCTFESVPSPYNKFPKPEFVGVKYKVPNWIAWNSFFY*