Scaffold B570J40625_100076219

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100076219
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4388
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (76.47%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007691	Metagenome / Metatranscriptome	346	Y
F009531	Metagenome / Metatranscriptome	316	Y
F020910	Metagenome / Metatranscriptome	221	Y
F022197	Metagenome / Metatranscriptome	215	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_1000762193	F009531	AGG	MTKQVAIYEMNYSCSPGGIDCWEATIQGYGESTTASDFKTAGEALNWVLDRHPDEMLELVVTSLPAYEKEYV*
B570J40625_1000762194	F022197	AGGA	MTLETETMENPEMYADYYSCDLAISITNIKAKNAHHAEAVMQTFIDEIGKIMTDELSWDDAQWDIEENVFLPELGEWHTK*
B570J40625_1000762195	F007691	GAG	VAYKVNTIDDLINEIYESNYSHLEFEENMGGEACDCHIHTTLNTIAHYAGIEVG*
B570J40625_1000762197	F020910	GAGG	MWSKYTFVCDPDECDALIQFTARDGYGFPNGSVEMRCPCGRKMAYISIEDAWEPIITDVSKVTPREVVKINTNPYN*