Scaffold B570J40625_100070386

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100070386
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4649
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (78.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003027	Metagenome / Metatranscriptome	512	Y
F006543	Metagenome / Metatranscriptome	370	Y
F012108	Metagenome / Metatranscriptome	283	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_1000703861	F003027	AGGAG	MKVADGNDKLGKGCLVVSRPVGDTCPPSCAFLGDGCYAEQTEKMYPNVRPAGMQNLITEKNRIRAMILEAIRKGKSIRWHERGDWFLNGELDTNYVENVMWACESIVSEGTALPDMWFYTHIYDSRLVAFEKYMNVYASVHNDSDMNEAKA
B570J40625_1000703862	F006543	GGAGG	MQKFAFSVDVVATELDRDSVAESIRECLEGCLPSDVHASVKAGEVKSFSEQGYKVWRARVTGVTAEAAGDAANPKTKKETVEV*
B570J40625_1000703864	F012108	AGG	MINLQLTVREALTLATDSSLSGDMYNKIVNAFEIALGVNQNRTVTITGGMTLDNRIYCIKAIRLHSGWGLKEAKDWSDILVGGWKYDKFVPAAANVRNSITLKTPEAAENLLRDLTALGCEGHLS*