Scaffold B570J40625_100065680

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100065680
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4889
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011754	Metagenome / Metatranscriptome	287	Y
F012023	Metagenome / Metatranscriptome	284	Y
F023522	Metagenome	209	Y
F042301	Metagenome / Metatranscriptome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10006568013	F012023	AGGA	MEQIDYTKLNERIVEQAYEGVLGEMSKEQLQKLIQDKFDRAKVYHESLAKLPTFSVN*
B570J40625_1000656804	F023522	GAGG	VIDPDPTSTILRAQRAEEHLKIDDRLMQLLDTYHVITLKDDDFSEKLTWCLENCQNKFRDLSDSNGRAWYFQNEQDAMLFAMKWS*
B570J40625_1000656807	F011754	GGAG	MKIGFSLGRCVRDIVKGSVDINDVAFIIAATSIHDEPQLANVIEQYMYRDDEYLYGLDEAACQAVALELWKTNKVLQPRRQGLHRHRQPENAVWVDMFPTVISENHSVKTAWDAYRFMIHMVENVDTDALETFK*
B570J40625_1000656808	F042301	AGGAG	MVKEGSKWAGTGDNNKFHVIHVIEIEGHTWVHYIKENAPEDSNREYSCYLESFLQRFRPLPE*