Scaffold B570J40625_100064178

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100064178
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4972
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003643	Metagenome / Metatranscriptome	475	N
F008131	Metagenome / Metatranscriptome	338	Y
F008357	Metagenome / Metatranscriptome	334	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_1000641782	F003643	AGGAGG	MTKDLKRNGLVEMQEKILAALASYGRHFLGAAIALYMTGNTDPSDLIKGGIAACLPVILKALNTNEPSFGFTKK*
B570J40625_1000641783	F008357	AGGAG	MAGQKNFEVDQNTTFSFIVEYKDSEGNPIDLDGATAKLQVRDTKGGSKLAFSLTSPNGGIIIDAPNGKLTCKMTPTQTNKLFYPKSSYDLMITDSNLNKTKLIEGFLTLSRSVTI*
B570J40625_1000641786	F008131	GGAG	MSVKRLVPLHAVVLDSDPITGRIGDIYYNNSEEELRYFDGSVWNPVGGAITGILEHIHTYDGAIFSVESIEVPASGVIDGGTP*