Scaffold B570J40625_100059340

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100059340
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5271
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (16.67%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Falkowbacteria → Candidatus Falkowbacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000710	Metagenome / Metatranscriptome	925	Y
F002287	Metagenome / Metatranscriptome	574	Y
F004838	Metagenome / Metatranscriptome	421	Y
F041161	Metagenome / Metatranscriptome	160	N
F079522	Metagenome	115	N
F083616	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_1000593401	F000710	N/A	MASSMDISYRQGIRSKGFAITTPTGVTQQTLSLSGLAKSFEGILLTSAFTATPGTIINPKQLRITLTINNDVAIDDDVAVHYASPATGGFSGGFPFFIPIPRRLTGQDTIQIRFTNAAASQNVDVTVWYRNEL*
B570J40625_10005934010	F079522	GGAG	MNQNVTYGKDREAIVPYDVAIWWHLAFDVEKSIFNPTYIPLELLEDIQQLQRRSIIKALPDSDPGRKWLILRFFPEGI*
B570J40625_1000593402	F002287	N/A	MSQISKLGYVDNKLGAPSSGQQTTRILFNTIEAPGTTSSLTFFKTFQGLTQGQTNLTQNKLDSMESMVIKTIWLAQYDTSGVLNQFGGLVQQTVSIIVGNQTVVKNLPIHFNQGQNGQAFDRLHENAGVTSDLTNPPISTIQTNMPVEIRLLTDIVIPPQVAFEVRIDSNAGVYSTGAVVCALSGYGKIFSAGNTF*
B570J40625_1000593403	F004838	N/A	MALSAQDKILYVANKLGLSSLNLMQGSTGAVYDVDTDISGQIFTSASRHQNPSITNLTQNEFEVNEALLVENIAFYVKNASGQILNFQEQYGSNAVIVFDLVIGNKRVMKSTPVFASGSPYTFANTGNVASLNGETTLQALIPRHQVFLEGAGVLIPPQVQWYVDYRVFNVVTGATITPTDAKTIGCYLFGTRVLLNFNTSI*
B570J40625_1000593407	F083616	N/A	MFLQLHDGPDLPYGLRPIPYPKRSGPMMPVRYAEDPFAPGSPVMQTTPYRLLAGCDQAQVYADFVPQNANGWKVRLDQVSSGQKLVKDYQTLREAKGTGSAPIYSADGTITGFKQASKAEVVAAYIQLGLKALRLAQTGVQAGEASRLKEDAQKLYNENKWGIADVCNQTLVMLQNNAQNCYDSLNWWLKDQGTPGKSAGQKRIANRSVVIRQNALLILVKEIEARGSSFTPGGKSAPVGIAAILALVAGAAFLRF*
B570J40625_1000593408	F041161	N/A	VRTSKTAYKSLRHTIDMMSRQVADSIEFANDFLPARTTCQEIWYILKDNLIYRNDPPGIELLQSFPSLMEDNYWGIPGAGDCDCFTIAALACAKARNIPARAVIVGNSSQSPTHIYAQLFDGSKFVDFDLVSSSYGTTKAYKNKQIIKLH*