Scaffold B570J40625_100057306

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100057306
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5407
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026266	Metagenome	198	Y
F049625	Metagenome	146	Y
F054861	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_1000573064	F049625	GAGG	MLSDIDLKDWIEQPSIPLYDVPRETPVKTPNGMLLWFSHIDGMYSLSYDANGSPVHMQAWVKVNPFKRKANDNE*
B570J40625_1000573066	F026266	AGGA	MTTDTITFHFIGELEDSGAIVDVQCQIDEDGDCRSLDFVMYKGIDVLDVISHFQWSDLEWQGSKKYKLENHEQLTIAHDQECALEAVYGLSKPSLTIR*
B570J40625_1000573067	F054861	AGG	MNTKLLKHTRELFKSYDVPEHVRRSYRLKWVKSIRNLGDKWLFAKPITRKENTQ*