Scaffold B570J40625_100054612

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100054612
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5604
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001561	Metagenome / Metatranscriptome	670	Y
F003750	Metagenome / Metatranscriptome	470	Y
F008494	Metagenome / Metatranscriptome	332	N
F008552	Metagenome	331	Y
F009750	Metagenome	313	Y
F010398	Metagenome	304	Y
F043399	Metagenome	156	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10005461210	F043399	N/A	MFLIDYPIVIWTIVKKNNNYILLDSSGVEVFRRKENRKKEIYQYCEDNGIDFQEEF*
B570J40625_10005461211	F003750	GAG	MQVAIYSGGIVAFWQITKHMPKALYTLLECITVMTFSVLLLTPFSMIIEYILGGNIDTTMMFVGCLATVSLLSTMWMVMVQSSRELQGKKQYQYVVL*
B570J40625_1000546124	F008552	N/A	MNVMIISFEASANIDTTLFGYFSMQYDQEFFSDIRENLTEISKDDTLSFKLDPEEVKLLQGSYENVKRVISISDVEQNKFTNVFKRKFDTSGFKKFKNVNLHIDKDYFYFTGHHENKDGTKPVEFQSLNFDVRFIESLENKFKSMVN*
B570J40625_1000546126	F001561	GGAG	MQTREQKIKLLNKTIETLWHGVSDTKEGDYPKIINLYKEVLKLDAKNRDAWENMIWLMWSMAVNKKDTSWLFEAEKFAKRYLSLNSKGYRAYEYLGQFYRIMYVDLRLAVRYYESAIRWKDAPKSTHHSLISVCEKSSDKIRAIGYCKMTLARFPNDPYSKSKLEALTKL*
B570J40625_1000546127	F009750	GAG	MKEIVTAIYQNGVFKDNKILKPHLTDRIGIRMKFPEGAECILWTNGKKYYAVCEAFGTIFTINIPRNIGDDIWDKFKTHYEGNYFYQPF*
B570J40625_1000546128	F008494	AGGAG	MRKTEVITMFMNAVGQYTTAIDKTADLNINYKKSVYALEDAVNLIYRNVDAKELGSNAEARNAKVSEKTQDLIIAKREAEYQLETARANESRIKAEVDQIKYIIRALEVKEEA*
B570J40625_1000546129	F010398	AGGA	MEISIQGIAKVNYELVIDEDVFNDACEECGLDPANFKKFTKDQWDELNPHLVQAVVDNESDIDYTEIHVESSVFADTLTIDDSDNMTTVYYDKNRKTDSFEIL*