Scaffold B570J40625

Basic Information
Taxon OID	3300002835 Open in IMG/M
Scaffold ID	B570J40625_100054375 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002835 Open in IMG/M

Scaffold ID

B570J40625_100054375 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5622
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

5622

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.099444	Long. (^o)	-89.404444	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.099444

Long. (^o)

-89.404444

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006017	Metagenome / Metatranscriptome	383	N
F011388	Metagenome	291	Y
F027501	Metagenome / Metatranscriptome	194	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_1000543751	F006017	N/A	AWASKYTVDPSAGDGIKAKAKATGFVEKEGVSDNGSSLIDLIKTAKEMGAKARYAKSWDDVVISAHRGAGLIIWVQQAVDYPAVEISEWHKKWQNYWIKKDKKHIAVGYGHMTAAGWDAVDGWQWACPTRSGKGKEKFGVVVTEEQLKQIAASKKKITGGAAFKHVAIVEWK*
B570J40625_1000543752	F027501	AGGAG	MYSDIKAGIRWVIDNTGVDEALIEFGRTFITVSISVALGLGIPLLDITGGDFRTVLSAGLASGLQVLIKFLDPKNSAFGIKEKSPEDKAAADKQFDI*
B570J40625_1000543756	F011388	AGG	LKPLSNDVALDLARGRSDIEFFALRWLGIQGNPGQVNWWKACSERDETGYRPRYITTVVSAGNRAGKTLAMAVVCLHHALYKLGTANPDPNDPESAVRWSNAPYEWYHVGIQQETAELVFREVEAILGGNHPAQKGRGCPLSKELGKIIDTSKKYRGEYPWIKFHPVVGGASIHFRTTQDRAKALLGKDMNGISFDEAAFEPHLVMIYQEVLNLRRLSTGGPLHFIGTPSEGINDYSELWEKGNPENPARDDKFTSFRLSTRDNIGYGLTQENFDDVVRQQAPYLIPQNIDGYFIEARDAFFWSQSILASYKTLDAEISPERNHRYVQGVDPGISHDATWAITLDITDRRKIRGVRIRKRSGKQSISAVVNMVREGHLLYSQDGAFCTTIVDSTGLGGRLFQQEFSMIRPLRGFDFGGTKAKKVELLNDLKAVIDKGQVEFPIGGPWDELKRQLLIYRLDDKKLEQDAVMALAIAVRHALRNPEKGVENPTFTYFGVSD*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold B570J40625_100054375

Overview

Ecosystem & Geography

Associated Families

Sequences