Scaffold B570J40625_100051568

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100051568
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5844
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (15.38%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003714	Metagenome / Metatranscriptome	472	Y
F014261	Metagenome	264	Y
F021297	Metagenome / Metatranscriptome	219	Y
F024551	Metagenome	205	Y
F042864	Metagenome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_1000515681	F024551	N/A	MTIIRPDSLPRFWWLFPWSIARQLHKNAVALRQLADTENAINRTLKAEVTRLAHSREHWIAKHDRAYEVAMHNERVIARLEDSITRGAITPD
B570J40625_10005156813	F021297	N/A	SQGNTFACTFTWTPGATGPANLLTTTISSSLEDRQGNVYAMTVTKAGDGLSFTVTYPGSTADWAIGLGKWDIKFVFPGSTISRTELFRVNVIDSVTV*
B570J40625_1000515683	F003714	N/A	MPNANHPYTETLTFAGRVIPLKRPMAEYAARRLQAILPQIAALNAAGKSQADAAAALDTTVCTLRQWLDITGTQWVNLNRRGPYRRQK*
B570J40625_1000515684	F042864	N/A	MSTPTKPKAELVFDKAMHELLKRKVVDFRKAASLKDRDGSVKGLGSYALYGIDHARGQLVVLASEPTASDFNKYVTAKAKADVCSRYDQVVEYRDAGSHSNPKVTVLCWHLA*
B570J40625_1000515685	F014261	N/A	MKALITLSFLIIFGWLAVVTFCGPELARAINGPEPVKAKVVRHHR*