Scaffold B570J40625

Basic Information
Taxon OID	3300002835 Open in IMG/M
Scaffold ID	B570J40625_100050785 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002835 Open in IMG/M

Scaffold ID

B570J40625_100050785 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5910
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (73.33%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

5910

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (73.33%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.099444	Long. (^o)	-89.404444	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.099444

Long. (^o)

-89.404444

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000684	Metagenome / Metatranscriptome	938	Y
F006844	Metagenome / Metatranscriptome	363	Y
F008305	Metagenome / Metatranscriptome	335	Y
F009882	Metagenome / Metatranscriptome	311	Y
F019826	Metagenome / Metatranscriptome	227	N
F035304	Metagenome / Metatranscriptome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10005078513	F009882	AGCAGG	MSTNINDAVTIDKLEVPYNPNLLVTYKAIAGTYAAPEEATYLTSKVTELEWDLHSARAKEDSLRSIQGTVRQLEDNIVEWYDPNYSKEEVLVALCELFGINPVKEIEVQGTVTFTGTISVPMSEIADFDLSNVSIEADLSSYDYDADLNVDEVTVEEAY*
B570J40625_10005078514	F000684	AGGA	MTLGGYTYQIGDLFTTSKTGVTGRIVKFSPINSKLTRISLQLANGSRRLAMVSTTK*
B570J40625_1000507852	F019826	AGGAG	VRTIRLRISKEEKVADKITTLLSDFTLDLEAIGFYLAKASPHIIYTRANEVLEAMQYNKEVEQLDRGAYYGNGR*
B570J40625_1000507854	F006844	GGAG	LARWEIEVIFEPTGDYMNFEYETDNEDEDSIFNEISNQLSIVPNLIEKNEEE*
B570J40625_1000507857	F035304	N/A	MDLNTLREYIRIHTISLEQDLQNEDGADSIVPYLEGAIHVSKHYLEMIDE*
B570J40625_1000507859	F008305	GGAGG	MLGYTYKDIQAFGNSLTWAIDTAKNQGDEQNYKQLLIVWDFFEGLLAEGYIDENTYYG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold B570J40625_100050785

Overview

Ecosystem & Geography

Associated Families

Sequences