Basic Information | |
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Taxon OID | 3300002835 Open in IMG/M |
Scaffold ID | B570J40625_100047381 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6215 |
Total Scaffold Genes | 15 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (86.67%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 43.099444 | Long. (o) | -89.404444 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002540 | Metagenome / Metatranscriptome | 550 | Y |
F017816 | Metagenome | 238 | Y |
F083632 | Metagenome | 112 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
B570J40625_10004738113 | F017816 | N/A | MSPALIAITGVIYLVVAADLALHGKAGLGLAYLGYAFANVGLYLAARAS* |
B570J40625_1000473813 | F083632 | GGAG | MSLEDLDAYVWSQLSPRRYAAGRPLVARLTKRVVRKFPHLVMSQTKPESYGMVMHEIARSIERSERQNYGMGIILTLVLGAIIQEIVKAVLRWWLQSASHRALMLGWQTEMRR* |
B570J40625_1000473817 | F002540 | AGGAGG | MSTPNYQGTADEYARFGPMLNVWQQLALLQAWAPLIGYGQRFVNEIDPYRKSLVVSDAAEWLASKTSAQVDDQLVRLLADILKTKEGEALVRFLLLQAEAAK* |
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