Scaffold B570J40625_100044954

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100044954
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6444
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (44.44%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (30.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004583	Metagenome / Metatranscriptome	432	Y
F006220	Metagenome	378	Y
F007310	Metagenome	353	Y
F013084	Metagenome	274	Y
F015472	Metagenome	254	Y
F018927	Metagenome	232	Y
F033432	Metagenome	177	Y
F048994	Metagenome	147	N
F072322	Metagenome	121	N
F074878	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10004495412	F004583	AGGAG	MKSTRNSDRLREILFSTRHQIVSLKDIQMDMLRIDSKVANQIATQISALEEVYKHQLSLVNQADNVEPKRNGWFSGHIKTKEDRLANIMD*
B570J40625_10004495413	F048994	N/A	MIGTVKIEFGAMNLYVNGVCVATTSTMAGIKHAAKRYNLQGYILATG*
B570J40625_10004495414	F006220	N/A	MKKFKKFIEELAIASGTEMMRASQMRPSTFKDKSKYSRKQKHKNRQDKNSGDSSLQCM*
B570J40625_10004495416	F007310	N/A	MRTVLWNNTERWFNHHHYELLIEDITGFGLNESLCEETVKYMAKRLSDTKYQRRFKTLYTIYENEYDALVEKFNNQADNNGKIEVA*
B570J40625_10004495417	F013084	N/A	MGILSILGLMEETKNTVLSRGHNVKNWLVLGNDCYALECADCKKTVMIKENPLPNEIKVGGEAIAVNCVKPVKEKKLRKK*
B570J40625_10004495418	F018927	N/A	MNKHIEITRHLTVDGTSTYYVVEKSKNSSSIIWNGTCKQAAYQVAYRNARKENTPLYDTLYKAEVDRNGVKHIIPVGNELLEVN*
B570J40625_1000449543	F072322	GGAGG	METVDFVNATEFFDAMELGHVESDEFLSKFTYGDIRTTFTLVSRGTFLSYLKSFITDCEDIYEKDVVMEALRDYNLSVDVRIKYVNIEA*
B570J40625_1000449545	F074878	N/A	MNTTDKVIVKFRFRTPRMVYSVYFNGMLLTSGYDAQQLGEEYAHKYGVEWLLQDGDKFYSQKGLVK*
B570J40625_1000449546	F015472	N/A	MVVAGWRQVLFTERSRKVMAHGYLNNGGTRWVTDNKIQVTGEVNGKSYDKMRQPMFWEQLGNFAVCYVRVGRTVFCGFTNDNDGTIQLKLEKCRIVR*
B570J40625_1000449547	F033432	AGGA	MSNYRKKFLSLWSAIMEEEKWHKVNSPACKPSCKGWNAWAPLCECGENYCTFKPSGNLEDMQIVIISIPLDF*