Scaffold B570J40625_100042555

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100042555
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6706
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (94.12%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018127	Metagenome / Metatranscriptome	236	Y
F029017	Metagenome / Metatranscriptome	189	Y
F031754	Metagenome / Metatranscriptome	181	Y
F102503	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10004255510	F018127	GGAG	MTKQKDNWIPWAIIAGLAFYVFSQQPKGGGDPSTAAGVTAVVRSTIPSIRAAYKQAFLDAAAKIESGEIKDQEQWTKFIEENAGAKRIEAMNKVYTAIDELKLPVIFAGREAEIARINKEIASAW*
B570J40625_10004255513	F102503	AGG	MERKNISQPEEAWAAWDKQAAAMDMTLSGLIFEAMNEHLGLFLPRKTKKRPKSKPVAPKRQKRNSGLR*
B570J40625_1000425556	F031754	GAGG	MTEKGSPILLLLVLGLLYWASIPVDAPDPTQCDLMDTAPLIEEVATVKESFAVQPNHIADASKKVDPMPSPSVKHEKTKREILIFVSANCPPCEKWKRCEMQRFMDAGWAVGIVEVHSYGLTPTFEIESGEKKATIKGYTTLEQAAEAMR*
B570J40625_1000425559	F029017	GAG	MDETGFVTWKLVQLILWAGPFGVAAFLAAIAGAAFYAGYSMRPKQPKPMQAAKLDHIKYDILHDGTLGPGDPRGLEDPE*