Scaffold B570J40625

Basic Information
Taxon OID	3300002835 Open in IMG/M
Scaffold ID	B570J40625_100040797 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002835 Open in IMG/M

Scaffold ID

B570J40625_100040797 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6913
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (21.05%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

6913

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (21.05%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.099444	Long. (^o)	-89.404444	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.099444

Long. (^o)

-89.404444

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001754	Metagenome / Metatranscriptome	641	Y
F003291	Metagenome / Metatranscriptome	495	Y
F005389	Metagenome / Metatranscriptome	402	Y
F011393	Metagenome / Metatranscriptome	291	Y
F018718	Metagenome / Metatranscriptome	233	Y
F093862	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_1000407971	F093862	N/A	MTVKFESELQIIALTKLLSAVYETPVRPRGRHSDRKKVLGSKWRKWNQNDIPWRMAERVTFYKVNR*
B570J40625_10004079712	F011393	N/A	MGEQIAYNKCEHCNIELHTNDAGEYYPVINRMDKHTLMRGEYIPIGNHLQYPRNWGKQKGATVLLETRIQDKRKQLEEAQLELDKLTACLDKVKHWDSTEK*
B570J40625_1000407972	F003291	N/A	MNTKEINEKLVSVFTQDELAALMTAMAGYVNVKRKQGRSTGIECVVFNKVTDALLLSNYLNAEVIDTKPNSNAPMGSAAYKAYEAMYDSDVRAHS*
B570J40625_1000407973	F001754	N/A	MNTVYNNFAASKMSNNPRFEVVVSFRDFMGKEHNIVCKTRKKLVEANQFLKMFKTESVAIGKILGEYPVVMGEYPKKYHSEIKRELASAGFGSVSNFLIK*
B570J40625_1000407976	F005389	GAGG	MANKSKKAAKRGNIYETVSNNIQKITRPSGTTSYRVRVSEDGVMYSQYETSLKKAKALRNSWVG*
B570J40625_1000407979	F018718	N/A	MTIREFYVKNYPSDDMGDGINPTATFAGLLNQLIVGGDVYEYLYVYDSIIRERLFERLAEELNVKYDYVYNLWIK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold B570J40625_100040797

Overview

Ecosystem & Geography

Associated Families

Sequences