Scaffold B570J40625_100040098

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100040098
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6999
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (81.82%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003965	Metagenome / Metatranscriptome	459	Y
F005348	Metagenome / Metatranscriptome	403	Y
F014849	Metagenome / Metatranscriptome	259	Y
F018352	Metagenome / Metatranscriptome	235	Y
F021757	Metagenome	217	Y
F023275	Metagenome / Metatranscriptome	210	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10004009813	F005348	AGGCGG	MINSVMSFPCDECNGVGLIFWGNDLDYDVEKCDCSDFALGDLFTSGEAN*
B570J40625_10004009814	F021757	GAGG	MMTRKDYVAVAEILNSFQDLIADPFTFEDLVNEFGDFFSADNPHFKFDKFREACNAN*
B570J40625_10004009815	F014849	GAGG	MLTNLDLLAIIIALSGSMLVMFLFYKQNVAQQKEIRRLRNELRKALKV*
B570J40625_10004009816	F018352	AGGA	MGKFKNTLMDILAHGDCYGAGWQFTGNAIDYDVWACECNPYNIPADEIQEYHQLFNTKENA*
B570J40625_1000400983	F023275	N/A	MAILDNFEASLPDDYGTPRKTINDAIKEIIEDPENYELMERLKYMEDHGI*
B570J40625_1000400987	F003965	AGGA	MNSTIIQVCKSHVPNKSAISEVVDTQFTFCEVCENNIERWYNDTDPERLPMWTSWKVSK*