 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300002835 Open in IMG/M |
| Scaffold ID | B570J40625_100037258 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7374 |
| Total Scaffold Genes | 12 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (66.67%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 43.099444 | Long. (o) | -89.404444 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001561 | Metagenome / Metatranscriptome | 670 | Y |
| F013087 | Metagenome | 274 | Y |
| F033803 | Metagenome | 176 | N |
| F071239 | Metagenome / Metatranscriptome | 122 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| B570J40625_10003725810 | F071239 | AGG | LKKIHLSNFRKKFDDKTYQAVKDAISKNSFMANEVNINKILDIITDPDVKTKFKSWSNGYDFAVLN* |
| B570J40625_1000372582 | F001561 | AGGAG | VQSREQKLVYLKKTIETLWHGVSDTKEGDYPRIISLYKEVLMYDYHDADSWENMIWLMWSMAINKKDTVWLFQAEKFAKRYLSLNSNGYRAYEYLGQFYRIMYVDLRLAVRYYESAIRWKDAPSSTHHSLISVCDKAGDRVKAIGYCKMTLARFPNDPYTKSKLEVLTKL* |
| B570J40625_1000372583 | F013087 | N/A | MEPTVWIYFSKTGTGYELKGSDVISGFDAFINMDGTYMVEYAFSDMKNSMHFFIYEWDNSQKKRRTVFEGYQRENVLVNFAKNVDVCHLVRQAIYKDYLIVNDEEELERAIS* |
| B570J40625_1000372588 | F033803 | N/A | MTINLRKNIARFIYIIDQTTNVDNRANILKELDLTENEFSELVGALLDFSNSNDKEWYCCNPEYHGYIETFKIISEKTDKEFLL* |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |