Scaffold B570J40625_100037196

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100037196
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7384
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009945	Metagenome	310	Y
F011473	Metagenome	290	Y
F026794	Metagenome	196	Y
F057879	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10003719610	F057879	N/A	MTEPSTEPTNPRDTVRPEPVPAGGEQEPSSPFSDASQIPPWEL*
B570J40625_10003719611	F026794	GGA	MPDFHNSISDRDERVTASQQLFADLDAREATRGEVTFDELDRRYADPISREEAVALRPFFEAFCENRVVWCYELKERHGRPMHTWTPITEWDAHFKPMCLSLTYRTDDPFATE*
B570J40625_10003719613	F009945	GAG	MSTALATFKRDNGIATHRLAGAGHRYAWMAFFATITMKDGTRRAFTELAHEYSIADLMRRNKIADADTELEACQFLAERNGIPWPADEPKRKAKP*
B570J40625_1000371962	F011473	N/A	MNWKKYITDPSTNRPRRGAISRIAALLGTHYGCVRRMFDGVWTPTEQEAKGLRAIVESRTNLAPKKRSDAGKKRAAYRKRAVAKSCAVPPQLKGLRSAKKTAQK*