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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300002835 Open in IMG/M |
| Scaffold ID | B570J40625_100035753 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7590 |
| Total Scaffold Genes | 13 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (61.54%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 43.099444 | Long. (o) | -89.404444 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F010161 | Metagenome | 307 | N |
| F016812 | Metagenome | 244 | Y |
| F034183 | Metagenome | 175 | Y |
| F043402 | Metagenome | 156 | Y |
| F066782 | Metagenome | 126 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| B570J40625_10003575310 | F043402 | N/A | MIEKFKELVFSLDEKETNNIITLLTLLLESWKDDKINLYTEIQDFELTTIYKVLNLFNEQTEEAS* |
| B570J40625_10003575311 | F034183 | AGG | MNKLKKLAEDINEEEAALIFQLLLSAFETANHQKVQYQSEDLKDESSLMVNVELNTRNVPAAVIEKLLDLLK* |
| B570J40625_10003575312 | F016812 | GGA | MNTLYPELILEEDEATFAANLFKLYKLDKRCGKLEAPSFRVLYLKDKITQVHISNHFNSPTCIISYYNIKDKSCIDARTISKKLYNKIHDHYFEVKKKIF* |
| B570J40625_1000357537 | F010161 | AGGGGG | MTRKNKMLYDALIDYVSYFYNCSDMPDSAKLNALKIFEALQDEKIDVIDFIPVMRQIQFSLDLLAA* |
| B570J40625_1000357538 | F066782 | GAG | MNDEILKKLGYNSIALEMLLKREAQINPEDILMPGERPSINKDPSLNDLSSDVKSDVENILNKLEEVKELLDNLPEYTMAEEEYDEDVRSFPMHKRHAKDELENLMEEIKQLQRYA* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |