Scaffold B570J40625_100034648

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100034648
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7759
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (11.76%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Hymenobacteraceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026552	Metagenome	197	N
F049433	Metagenome	146	N
F049442	Metagenome	146	N
F068494	Metagenome	124	N
F082686	Metagenome	113	N
F086640	Metagenome / Metatranscriptome	110	N
F086682	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10003464813	F086640	N/A	MKKFILLEEEKLEIKSMYGLTEAPIPVRQTTVMDTLSVAPNKLLFQNSTNKDNTIFLSAIDGAGKVIPNTTYKYKIGGSYSFFDFSVNIRNLKRDAQGNLIGEVLPSNSMAASAMRSLIPKQNLTKDGWLMIKIPNQKLTEGIQSLKSTKGQTAEIDAGQGINVTLQYIGK*
B570J40625_10003464814	F049433	N/A	MKKFIITEEEKSRILGMHQEHGYNSLNESPSGVGFGPEMNGLKIQKSEQNEQDVEQINDPKIINAVNTVLKKLMMSPKFSTDDTLFSLIEKGDLIKAYRLHRNLNDSVNYVDYELLDDMLNNPETKDSIVKLLPNVKNLLTNFFS*
B570J40625_10003464815	F049442	N/A	MNKENLEQGLTKLLKTFFTKKYYRDFSDLTVVLNEYEEDADDVDDEGNWSSAESYYFTVYSNNFNGSQPELELYNLARELFGNIIGKSNWIDIEFKNYEN*
B570J40625_10003464816	F026552	N/A	MELTNVIEKLLNRDSFLNLLENDIIEKFEVSVSPYESKILVIKMFLNITKDEFIGTEESTPRLSEWEVRGKLWENYNLDTAWWHAHIIPNRILKPLVGKDYFIKILLFVVDKNGIHLFTEN*
B570J40625_1000346485	F086682	N/A	MSKKSPYSNAYKIGLSVFIVLVVLISTIVISVIKSCEPKVSRFFNPKTNMTDTVFYDGPDTIYLPNPQKIIIHDTFRIVCHKKHCEEVKVIKDTTTK*
B570J40625_1000346486	F068494	N/A	MDKLESILVSFFRNIYPFITKIKVDKDSDGDDVEYTLTLFCDGKKIQSYLPISPNFIDGTGKLKKDLLDRPFNHFVSVTDNNQSNIGRAKTLETGLKKDFYLARRMSGSEFKSGPVTLRIVLQ*
B570J40625_1000346487	F082686	N/A	MGRLILTEDDKNDIKLQYQGSVDKKFYDFLRANVEVEGRNVEYFEKPFVLIYIDGKSRLLNNSKKYLVNVLINAYGDDFPNLNDASKRLTAKKYIDELKKQYFYED*