Scaffold B570J40625_100034273

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100034273
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7820
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (43.75%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005589	Metagenome	395	Y
F030427	Metagenome / Metatranscriptome	185	Y
F073560	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_1000342734	F030427	N/A	MKKFFVSVVALLAATSAFAADPIFGPAKPPVKEGTGTFKAQSYGLEVKSVNDVKFVGIYDNKNGNGAVQKKLQSFSFQGVEFFTTATLSTNANVDKAYAGASAMVQFGPVVPGISIAAGVTVRGVELERGFNIKNSYYPTVALTVDPMTLVRNTMSTPARAEKTVRQFVKDLF*
B570J40625_1000342738	F005589	N/A	MAKYKHTFWRYVPSTEKFKSEFKFVESLESDSDAVPEFHDHYCIDQVINLETGQMRVKNHSAPEYCVSKFIGWSLELPPVEKANKQEIFIVVHKSSFSHKKIEFDEFLEPENNRYNQEEWDFLLSVIESRFTKQKEWAKVGIRTPSQYDDGTQVFKTEDEFRAFSFGRRAYFLYHLVRNYYFTHLVRRLNIGYTQ*
B570J40625_1000342739	F073560	AGGA	MLVCDVSAIDKLIDLYFENLSVIYNGNKFLLYDLRDDFVDNNRECSIDDHEITTSGIYFKDSLIVAIDKQQDFRKDDTINL*