Scaffold B570J40625_100034207

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100034207
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7832
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (88.46%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000808	Metagenome / Metatranscriptome	882	Y
F017133	Metagenome / Metatranscriptome	242	Y
F024314	Metagenome / Metatranscriptome	206	Y
F039631	Metagenome / Metatranscriptome	163	Y
F045756	Metagenome	152	Y
F093845	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10003420712	F017133	GGA	MSIWTKFATVNDYPKGMMNLCPCGQVVLAPALYHEGQPYWENPNKCKELFEGVNK*
B570J40625_10003420714	F039631	AGGTGG	MTTLDNNYINSSTYGNMTLNQRIALAAEKVANGEVVNFRGASVTTYAKVMRLANRIKQEREFPQCPCEEC*
B570J40625_10003420717	F093845	GAGG	MKITLTSTSGATKEMNFDTKEHVLEFIELYKATLYQGQAVCIDAPLIGIHSGWIQGRVPRG*
B570J40625_10003420719	F024314	N/A	MDSDQQKLSPEQAQAILLFQIEQKLRFAIAKQVEDRFHVMYHDASHVIAQYIRNSA*
B570J40625_1000342072	F000808	GAGG	MEYNYSLTIAYDGELVSTTRSADMLEIVNAWNNCVDYGTAKEYATYNLSDPMGKMYTKTFYSNGNVSVK*
B570J40625_1000342079	F045756	GAGG	MTKYNVLVSYVVEAEDEMRAVFALNKTLMPLSENELEKFNAFHVEVVPQ*