Scaffold B570J40625_100033829

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100033829
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7896
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003888	Metagenome / Metatranscriptome	463	Y
F004816	Metagenome / Metatranscriptome	422	Y
F009252	Metagenome	320	Y
F023523	Metagenome / Metatranscriptome	209	N
F029658	Metagenome / Metatranscriptome	187	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10003382910	F004816	N/A	MKFIKYKQVARITLYGFDDLLRENNSSVYTEPLNSEFFTNNLAGGVPIGNNAKRMRFQIKGLDNIKLSENARFCMESINVPIIYDAVYERKSLSQTIVRMSNLSSINCFDSNGNGQTDPVIFTSQTHPSQQRLGTVTNNVVYSNTDASPVFYNPYPEMLYNFPISSNFLNNRYFDFTFIMQFMAGDFINLTDDQSYFDSFHISFIIYDLDEQELLLTSTQDINFKKFGETLPRKI*
B570J40625_10003382912	F023523	N/A	MISEQSLEGWDNNPVKFSNVKYPQTKDDNAPKNFFLAIFCGSRGSGKTYLLTKLLKLLEEKKIYYEGIEIPQRIILICSTAHSDSNRVFKSLKNLDWDNDVIEDYNDSLLQDKMEELKHDLDHAKEYKLYKSVYKKFKECKDIDELKDEEMKLLYKFDFIKFQDLEKPKYPDGFITHYIIDDMIGTNIFKNGRSLFTNLCIRNRHITPSNIIISTQSMMMIPKTIRLNANLLALFKFANKNIILDDIYPTMSAFITEQQFKDLYDYATDESYNALVIDATKGKPIFKKNFESILKIN*
B570J40625_1000338294	F003888	N/A	MDVINDIEVLETDVKDCNEKCQRVNCAALYDAIMSSLKLLYDLVFMCCKKKT*
B570J40625_1000338298	F029658	N/A	MINFGRAVGLFNRFSPKISKGIGQVAHIARNVGQAVQNVRNIGSTVNAMSGGRIGSTPFGQKMQEITNKVESGANFIANNEGRVHGAINDISRKINA*
B570J40625_1000338299	F009252	N/A	MDKINIYINSKNRNENENANKFMVKIPNNLLRLNRNEFFTLNVNGFYCYNSWFNCIDGFNNMFQIVMCNMDDEITSIFDYTLQDGNPNVNDVRTNLNSILLNKVAIQYDRIRNKFIYKRTLPITTDNFKMYLRIINSEDFLGFYKSDRDKLILLPYFSNTYSNSIVNISGDEAIIIKISGDCILSGNTVDNFGLTTYQPSNIIFMKPIDVASNGLLKYSNEDGGDSFQYRIANIEQITYFELTIHNQDDEFIPNFSDYILLLQFVRHTTEENKLNSLLETLIDYVKQIYLIISQIVFPPS