Scaffold B570J40625

Basic Information
Taxon OID	3300002835 Open in IMG/M
Scaffold ID	B570J40625_100032616 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002835 Open in IMG/M

Scaffold ID

B570J40625_100032616 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8100
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (64.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

8100

Total Scaffold Genes

25 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (64.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.099444	Long. (^o)	-89.404444	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.099444

Long. (^o)

-89.404444

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005530	Metagenome / Metatranscriptome	397	Y
F010247	Metagenome / Metatranscriptome	306	Y
F013525	Metagenome / Metatranscriptome	270	Y
F019968	Metagenome / Metatranscriptome	226	Y
F032656	Metagenome / Metatranscriptome	179	Y
F091614	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10003261610	F013525	AGG	MHDLALKNPDQIKQELDSISEQMSEALYTFRRCEEFKKITFSQITLTKKLEKNCSVAEAEKWAYADDKYATIIEGLLVAEKNYSILKGKYANLQSWVDLYRSWLVTQRDLSR*
B570J40625_10003261613	F010247	AGGAG	MQVAGIVKYVFDNRLGKDGSPNKFPNYKFKIGENEIVLWSAIKPVFLEKGKNLSVICQASKKNGSLFVQTKEDKSPMIQELPSGAKPDTSFNVDDFESENFNEAVTAIEKDMASSPVPTKAFNKDEYMFTMALLKSGIESGKIGVTKEEIDLKIKDYKFLFQMNFHN*
B570J40625_10003261615	F091614	GGA	METRNNIVNTLASNLRFLRHNTQIEEPITGKVKYMSQRHLAEFMGSATQQVSKFELGTNIMSSYQIFKVSKVFDISIDKLFDAELVKSVYKKTIKQNIYAE*
B570J40625_10003261621	F019968	AGGA	MRNTGVICSMSYYEMKLMTAVLSRILLDNEVRGEHTKKRITTLISKLNNMLTKQC*
B570J40625_1000326164	F005530	GAG	MSNYIVTTIDPDYLSETHTVGNTSAQSSVITTGSGLVRISTTTGVHIRFGSNPTATLEDLLIPEHHVEIFAFKSGEKIAFIHHGGGSGEINITVVD*
B570J40625_1000326168	F032656	GAG	MNFYLVTYAINFVKVNDENIKEDVAHVRFFDSQNFANSNSFLASLKQVKKLRITSVEWDLEECNWYDYYEDISNTIH*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold B570J40625_100032616

Overview

Ecosystem & Geography

Associated Families

Sequences