Scaffold B570J40625_100031711

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100031711
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8271
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (80.95%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002515	Metagenome / Metatranscriptome	552	Y
F003965	Metagenome / Metatranscriptome	459	Y
F025743	Metagenome	200	Y
F093770	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10003171114	F025743	AGGA	MTATMIDMRFVYADLLTPSQLMEGDLINIDNNIVEVISVVDDATGDNYTITHRNEYDEEEETFCTYEDMFKLYVFVDDDE*
B570J40625_10003171115	F002515	N/A	MKKNVEELRRLMELRRSNAASAVPNKKKYDRKKCQSLMLELKKERGLHHD*
B570J40625_1000317114	F003965	AGGTGG	MTTLTLTVCKEHTPNKSAISEVSDTQYTFCESCENNIERWYNDTDPERLPMWSDWKVSK*
B570J40625_1000317117	F093770	AGG	MITLKHSVNLITEIDENKMPDNLLSAFLNLSEVEMERLLRETFVSVLETEGFLDTINAGNSWAVLKVAK*