Scaffold B570J40625_100030747

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100030747
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8455
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005879	Metagenome / Metatranscriptome	387	Y
F011935	Metagenome / Metatranscriptome	285	Y
F028510	Metagenome	191	Y
F036701	Metagenome / Metatranscriptome	169	Y
F088906	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_1000307471	F011935	N/A	MIKEIENFHKIYGEQIYPADGTVYTIEKASIVKTNSEPELLEYFEVKSWDKYNPNKPGEYQIAIFADHKNQHNIAAVYKTGYQGPIFTDKGMSAVHFKTIEFFKTYAVTLINRVIK*
B570J40625_10003074711	F036701	N/A	MDTLTFISIWILLSFPIVRHVNTKMEEANDMHRFKIAFQFVLFIRAQFEVPKWYLIQLTKLLSK*
B570J40625_10003074714	F028510	N/A	MKNTLKQRTYECKCGALTKEYVWDNDLDKTKINCSECSKQLTNKNLVSTNTNWAASIRTPTKNR*
B570J40625_10003074716	F005879	N/A	MFNEQVFWKDGFEGECRGGIFTRAVDLKKFLELVEANENENGGEVVGLRFDDNNLEIIIKPKN*
B570J40625_1000307479	F088906	N/A	MEKQSSRIVNKGLAGEPQHLVIQVIDTLKIFEFSQIKHVNESDVIRDVILVDDDFNQPEILHILNSMGHVVDITFDENENVTIYF*