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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300002835 Open in IMG/M |
| Scaffold ID | B570J40625_100030638 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 8475 |
| Total Scaffold Genes | 23 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 21 (91.30%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 43.099444 | Long. (o) | -89.404444 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F015204 | Metagenome / Metatranscriptome | 256 | Y |
| F017819 | Metagenome / Metatranscriptome | 238 | Y |
| F027494 | Metagenome | 194 | Y |
| F033010 | Metagenome / Metatranscriptome | 178 | Y |
| F038210 | Metagenome / Metatranscriptome | 166 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| B570J40625_1000306381 | F027494 | N/A | RLTRHTKSRSPCSALTTPVRKPKMKYKTEMTFPVELTFEVLPAMDVEGTELPAQLDITKVLLTIVGPSGKPRQVDITNTLTEDQTMLFEDEIVENYDEDNRV* |
| B570J40625_10003063811 | F015204 | AGGGGG | MTFNHWWQQLTKAEQKIIGEGAARFVWEECQKHTLMTIEDACKAQVAYDEGFRQGQARYTVQISGWRLSPGIQPGMIWIADGGGEGGDFHIHELAEVIGKFYQEKF* |
| B570J40625_10003063818 | F038210 | N/A | MNIEKNIPLPGGVDPRERYPFPEMAVGDSFMVLDATWIKNLRSAAYMYSRRHLGVRFTCRRHGEGWRLWRVS* |
| B570J40625_10003063820 | F033010 | GAG | MVELKVVKRGRKINLSPHQVAFHIKHSDLRCPTYVLVQYQPAGTAHASKSELLLYCGEQAVDLVNLGVDTPALARWPWTAISWAELRNKMLRG* |
| B570J40625_1000306383 | F017819 | GGA | MRKRSKYRPRTVLQSPLNYVLSGLKPVRELSDVYLAVQIRNRNALDQVRKGLALREDIDMLIGAFNITEALAMRGMGHDWVEEIRQGQDALLELSRRGVARGMRFIMTAEQWESLKLVMDLHEEQLAHATVHDIEKAHDFVLAALRQGKARAIVQTRKEEA* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |