Scaffold B570J40625_100029875

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100029875
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8627
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (78.26%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F000671	Metagenome / Metatranscriptome	945	Y
F001280	Metagenome / Metatranscriptome	732	Y
F002060	Metagenome / Metatranscriptome	597	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10002987518	F002060	GGA	MNIDPITIIMSISAAMLGGMGTSILVGIRESKREKIRQKEREQDQLKIELKDLKIALYKLERDLTEWKDKYYGAIQELISVKSELEETLIKLTFIDHKIDDLNRLD*
B570J40625_10002987519	F000671	AGGA	MEKILCYSCNKSKNKLNVRKSSLLPINLLMCESCISSKLEPRWVLILSGRQNGSDSVKEFIIKKKYLGQEITAAELLV*
B570J40625_10002987521	F000473	GAGG	MFIDKSLDKQKEHFKYGINQWTGEPNKPVFYNKEMAQKVREIKRPVTDLMMDIVQYPDFLAIRLYEDNFVMYDGIKKEMVIDYVSKIKKLIESYGVRCELEGQPSRGIL*
B570J40625_1000298755	F001280	AGGAG	MCIECGCESVGSESGIANIPGGILDVSRDDEAGLTLSMTSTPEQTREFINE*