Scaffold B570J40625_100029097

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100029097
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8795
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (96.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006385	Metagenome / Metatranscriptome	374	Y
F051126	Metagenome / Metatranscriptome	144	Y
F071231	Metagenome / Metatranscriptome	122	N
F076101	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10002909710	F006385	GGAG	LILDNGTLIAIVIALAGSLSMMIAFWQRNVKLEKEIRRLQVALRSERIKK*
B570J40625_10002909715	F076101	AGAAGG	MYKITVAYDSNAPHWQKDYPDEMKAWQAFFQFTDWGTANEYSTVNIYTPELVCYTKVFYREGRKVVTK*
B570J40625_1000290977	F051126	AGG	MSAKPYSIEDLLIGKTYRSHNRHDEGEVLYATPRPEIWYGSEFEAYAIEVRSKYGIKNFWATIAVKVGA*
B570J40625_1000290979	F071231	AGGTGG	MMTRKDYVATAEILSNYFATSVFDEQGEILFADLVDEFSLMFETDNERFDANRFAIACYKELEMAN*