Scaffold B570J40625_100028617

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100028617
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8894
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (46.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026559	Metagenome / Metatranscriptome	197	N
F028801	Metagenome / Metatranscriptome	190	N
F038204	Metagenome / Metatranscriptome	166	N
F047003	Metagenome / Metatranscriptome	150	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10002861715	F028801	GGA	MKIKVKNIKIPKCFPYKDYTCKVDGHKFHAMLGEDGEGKLIAGIDKKEPIYNYEDTLEHWMLEAQEMSNFYHNLVDFLKEVKYIHNQEKND*
B570J40625_10002861720	F026559	AGGA	MKYEVIERFAWYFPDNDIEVSVYRKQSYFRRFIMWLFFDAELRTYYKTLDNCQVKKG*
B570J40625_10002861724	F038204	GGA	MNTDKDIEFNGDDLVKSVESFVSTLPTKIEYFEYGNYGWGHIFRREIDTNGKNYISHTDDSVTFTDSFTDIYDETQHHDVTHTRKFNVIRDKLIASHKKKITELQKEIDILEKSDTIDKYNSIVYNKSN*
B570J40625_10002861728	F047003	N/A	YSDGKLPVLVEPRGMPDDVGYYVKDESQIYISETILEGEHIVTMETANRWVESGSSKFVNNQEGKPTWVTDPDAHSHSWLTTSEFETIINNYLELESGWHKERVDTHNKMVAKENIQPGSWMYAPPDMNIEPQYQVVLASMKRFEELGYDARVVFWFDN*