Scaffold B570J40625_100028382

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100028382
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8948
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (78.95%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000403	Metagenome / Metatranscriptome	1177	Y
F000903	Metagenome / Metatranscriptome	843	Y
F001897	Metagenome / Metatranscriptome	620	Y
F003182	Metagenome / Metatranscriptome	502	Y
F009883	Metagenome / Metatranscriptome	311	Y
F016643	Metagenome	245	Y
F024305	Metagenome / Metatranscriptome	206	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_1000283821	F024305	N/A	VAYANNAAALDNLETLMISIISAMPDGYEVGNVNQPQPLEVGAGKYLTADLQVSTYYTN*
B570J40625_10002838213	F009883	GGAG	MNEASIVIMCLIAGAFWAVMAYSVGFKEGERQGYTRGRAVARHAVSADRKAK*
B570J40625_10002838214	F001897	GGA	MASFMDGYEGNKERTDRWIATFPQGRLESHIIEFNAEKGYVLVQAKAFRNQTEIDPAGIDYAYGYLAAYPDKMKRWMIEDTCTSALMRVMALVMGNTEKATKEVMALVKSETPAADYDYWSTKHGDVPSYQTAAEAEQAGTPSFGSSADSAWTADAVPSCSHGSMRWNQSKPDAPKSWAGYFCSEKVKEKQCTPRWYVLRSTGAWEPQI*
B570J40625_10002838215	F000403	GGAG	MSDYVEIIYPQEMKARLMCNGEIVEEYKIEQCDKCSQLRRLDHFGYQKGYDKQDNIIWFCGDCR*
B570J40625_10002838216	F000903	N/A	MIDRIEEVQCMIAAIQHCHDRSADHSSRIVKNLSWFEYVAQMGESMAAELFVAKRLGYDYTPGITWDKSKADVGEHIEVKWSANPASNLWIQDSDRHDRDIAVLVTGNTPKMHIVGWMPVAVAKKPRYRNASQNNWSVPQINLQPIETLMRSNYAHPAI*
B570J40625_10002838217	F003182	AGGAG	MHILQFDCSICSKLYGKPKQRHGLKKGAELTEHEWFAQCMSCGTFGIKIVDDARIEEMSL
B570J40625_1000283826	F016643	N/A	MSVFNPVWRVIIGGETYTNYALANLSITSGRTNIYEQANAGYVNLELINLDQSIIDIEINDAVTIELQDSTNTFVPIFGGTVTEFDIGIAASGVVGINQSVSILALGALSRLPKALTEGVLAKDFDGVQILTILTDLLINSWNEVPAALQWATYDPTEQWQDAQNTGLGEIDTPGNYELANRGASTTNVYSLVSALATSGLGYIYENALGQISYADSTHRSIYLAANGYTDLSAAQALANSLSIQTRAGDIRNEIVIKYGNNSSNEVVNSDATSIGLYGKLAQIITTTIENASDAGDQAAFYLTLRAYPQANFNQITFELTNPEIDDADRDALINIFMGLPLRISDLPLNMASGTYLGFVEGWTWRAAYNSVSVTAILSPLAFSLQAMQWQDVAIAEQWNTISGSLDWATALVVA*