Scaffold B570J40625_100027600

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100027600
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9130
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (60.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002398	Metagenome / Metatranscriptome	563	Y
F029440	Metagenome	188	N
F043935	Metagenome	155	Y
F060914	Metagenome	132	N
F072344	Metagenome	121	N
F078699	Metagenome	116	Y
F078721	Metagenome	116	N
F084222	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10002760011	F078699	GAGG	MKVGFQVAGTMQIPDGAIVHEDYLHQTYALEFNNKMYMLQVCLVAESPDGEYEMLHQFEEMEEHGIKNVRYDAAEFEPIVED*
B570J40625_10002760013	F084222	AGGA	MSRELYLSRLALEIEKYEEKGNVRKAQELHNYFLKVANIRDLDPEAFADDYREEQDLMPKLNEEYYGEYQENPDEDYVDDSLGSDMYDHDVNEFKNDTSSNAMNLINSLREELQHNDLALKIIDILEEELD*
B570J40625_10002760017	F029440	GGA	MYDLAVKNNKFIHIAPRDLKKKDIDWKMRPICDRINASDYCWTVFCCQGHFSGNQKGGLPYLVLLCVNEKRPDVLNKLYSAFEVDEKYDDRFPLCGPRSNMMLISMGVKDENFTYVTIHFNAQGKNDQDYCVKIMDRFSRTI*
B570J40625_10002760018	F078721	GAGG	MIVDVSGINKLMDIWGEDCICFFNETETTLINLRNHFEDNNLNFPIEEIKYPYRENSFKDNILLIVNDKKNRDDLKISNRENIDLDV*
B570J40625_10002760019	F072344	N/A	MYRVYLNKCHCKLIIKTLDLHKTIIKGEINKISPLMMENKKTQIKYNYDFEESFTFRAHSFFNLLCDLEEEHVKRYFNVLQLYPRSDIIVGVKKKLYLLIGFLSGDSCDVLPVSFSSDEVSVIKLSLELYSNLLCGKFEILSKVFEGLRVDLNFESIISSLCENRDLFTNLVDKNSPLNISSNLIYYKGKWAWDMLGVLRGSEFEKIGSIPLIKIEEVDDSRRIRY*
B570J40625_1000276006	F043935	AGAAG	MTKKEIEIFDDQIQYLCNHYQDRIKIMRQTLGINTDFTFMREVETIESLYKSLLELRKKEKGTYFSCGTSGWCLTYLRNKKYYKDGEKFVIKIYFSFVEADTYE*
B570J40625_1000276007	F002398	AGGA	MIAAISSIFFLLSSLDPIKNFVSLKTYISLNAQKHCQVYFIDENIPDFPRVNLIEKNRDAFFEYLDTIGIEHTQVGGYFFIKKK*
B570J40625_1000276008	F060914	N/A	MQMKRLIKVRSDISSSIFPIELYQVDDYFTAEENGVELFRFKSQHLCSIKAKELIRRRKNEKNARIIQDINELKVQGIL*