Scaffold B570J40625_100026091

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100026091
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9491
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (58.33%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004476	Metagenome / Metatranscriptome	436	Y
F004583	Metagenome / Metatranscriptome	432	Y
F004669	Metagenome	428	N
F011390	Metagenome	291	Y
F015209	Metagenome	256	N
F024112	Metagenome	207	Y
F025741	Metagenome	200	N
F056602	Metagenome	137	N
F059958	Metagenome	133	N
F074878	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10002609112	F024112	N/A	MAYTIGVRNKEMKIEDYDKERATVLNALYCSVRSAIQTENLHNNTRIEWIEDDFKVAQKKLEAIEAEMRVLLGDPFAEEVK*
B570J40625_10002609113	F015209	N/A	LLAEERWHKFESTNCKPSCKGWNGWAPYCECFENHCTFVPKGDIEDMELVIVAKPIDDVLRDIQIIP*
B570J40625_10002609114	F056602	GGA	MSNWTKGFIGVAIASQVFLFVIMFGCKVGDRFYISGVDLLGMILASVCTLVYIPAILVSHDSEKIRKKLNEQLQA*
B570J40625_10002609116	F074878	N/A	MAYTIAMNTTDKVIVKFRFRTPRMVYSVYFNGMLLTSGYDAQQLGEDYAKKYGVEWLLQDGDKFYSQKGLVK*
B570J40625_10002609118	F025741	N/A	MENTTITQFVNDNVEGDPAFKGYVVCELKDLVKQNPTMSLSDLLQDATESALEEWDRDQSYQEW*
B570J40625_10002609119	F004669	GGA	MHLWEIKNFQSSSVKSLFVGRTANGQDCIACAWNSSELYVFAYEGIVDTFLWALETFKSVGQAMAYAKLRNDFEDRRYSLPYHETMEQRTHKQLYRFQLQYLYIFESTLEIHSNLCDDTPENAIKNLISRGDIEAENSKLVNVLRNREVCA*
B570J40625_1000260912	F004476	AGAAG	MLFSKNGFMSVDTTEAFVKQALEFGNKDVVLSVVHSDGVIDIVFSPTMDAIEAEVYHFLNDGTELKYSMPIKTLTDNNISSLHLTSAIYAYLSEAFKVADMFRSTTRQSTDYAN*
B570J40625_1000260913	F011390	AGGAG	MKIQTTKYGLCTVKKHKYQTNGNLGLSLVDEDGCPITYISTNILPLAENEFCANIFNIGSTLWNDIATSGLFEKTGEDIQSGFCEYPVCKLLVEID*
B570J40625_1000260915	F004583	AGGAG	MKTTRNSDRLREILFATRHQIVSLKDIQMDMMRYDIKVANQVATQISALEEVYKHQLSLVTLAENVEPKRNGWFSGHIKTKEDRLANIMD*
B570J40625_1000260919	F059958	AGGAG	MATKTGLTTMDAVKKLMEFNKLYNTIVTTTVNEKNALTQAEWALEDAKFEILRTVDVKELGSNSEQREAKLSGMLAEQVKAVRSATLRYELVKAEEQKCRANLEFAKHLVRASEALTEA*