Scaffold B570J40625_100025145

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100025145
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9742
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (19.23%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000962	Metagenome / Metatranscriptome	820	Y
F011298	Metagenome / Metatranscriptome	292	Y
F014847	Metagenome / Metatranscriptome	259	Y
F016528	Metagenome / Metatranscriptome	246	N
F028145	Metagenome / Metatranscriptome	192	N
F030360	Metagenome / Metatranscriptome	185	N
F045700	Metagenome / Metatranscriptome	152	Y
F088881	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10002514510	F016528	N/A	MINNNELFAKVLADNPLPYHFGDKVNTNRGIGYISGYNFKDREKTWKFTIRPHGLPNYYIDVETVYGKVE*
B570J40625_10002514517	F011298	N/A	MAHFVKLSVLDPGHDDMENTTNRKYNPQLINLDMVINVEQSKVHSLIFTKNNSTHPIRVKESLDEIIALSRGCNKVLNG*
B570J40625_10002514518	F088881	AGGA	MAVTINYNVDSIQCYTQYDQYTDVVVKVGWSCIGSGIAQVGPQSGSEVKTYYPNTTPLTVNSGSWDSGSFVPFNQLTNQIVMGWVFAEIGNQKDAIDNYVTEQVQQMINPTIVNLPLPWQPTGSSQP*
B570J40625_1000251455	F030360	N/A	MSEQTYMNLKDAVKRPVLSEKTVNRSNKAFVRMVDSYQKWNESITADELRETYEDDIFNCLFEYDLDGYNLAEFLRDKVHLEPDAGLVDILDDMIYVKKSLEDEMLKQWVKENFLTISDDVVGKKVNAKQGIRKYENLYITGIRPDTYQVTISDDPKKYGGYIVGFENVTFVD*
B570J40625_1000251456	F000962	N/A	MENQEQTQIMNAHVPEEIKSKYPHMEFRGKQRQMNDRTVIEAYNPATNQTFFYSFDEDFFWFPGQIPDYKLPKSILT*
B570J40625_1000251457	F045700	GGA	MNIRPSQCFECETGTYIDVTVNYFSQLSGGRSLVTKDVTIQRCDTCGAEIIDSKASQIIESNIERNFPGHYDKWKTKNKPRL*
B570J40625_1000251458	F028145	N/A	MKIFLAFFINLALSLFASILLYKLFKVDVSPTIISIGLIVAYMFLPQRFHDWIAEK*
B570J40625_1000251459	F014847	AGG	MEFESNADILRDLMNQLHTLHKENARLLQKIEDLEKHNEELNRKLKSIQSLFL*