Scaffold B570J40625_100023803

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100023803
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10112
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (89.66%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000441	Metagenome / Metatranscriptome	1136	Y
F000868	Metagenome / Metatranscriptome	853	Y
F001176	Metagenome / Metatranscriptome	756	Y
F001781	Metagenome / Metatranscriptome	635	Y
F003603	Metagenome / Metatranscriptome	477	Y
F007921	Metagenome / Metatranscriptome	342	Y
F024786	Metagenome / Metatranscriptome	204	Y
F082666	Metagenome / Metatranscriptome	113	N
F084237	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10002380311	F003603	AGGCGG	MQSKEHKIGELLANSVEDHFFNPAALGRYLADQPIYTIDRVMEVVAWIIEKQAERYRREVANNGTISEGLIIANMLDKMIDKIKVSNDLKSVQLPITPKERGEFIKSLPEVKEQSYRYSWLHETNNGSNANINVTPVI*
B570J40625_10002380315	F007921	GGAGG	MIDWLVNRIFRWDPLRKAIFDEVRLYQSIDRSIWEAEKESPTNLTWSEGDTWYGWTYNRELKRYYFDDIGNESLMGLWEDQWLRETDEQRPL*
B570J40625_10002380316	F084237	GAG	MTNPDRDRSMRLKLAIEEMLKDIDMSGEEWNDHDKDGVAYWEKYEERLKYMEENGI*
B570J40625_1000238032	F000868	GAGG	MSDPHGTIGHYRKGGSMSFLENENQMVIDAEYSYIGEQLVEEWVNSNLDEGQLYADYCFADMAESNYLKGRFNQFYDLKPGDQYYIEWDEEK*
B570J40625_10002380320	F001176	GGA	MATPPNNQPSGAVTSQEAGRKNPSQGKFRSGVNGPRPATKIDRNKHGIRRETTIGPKKTRPKKV*
B570J40625_1000238035	F082666	AGGA	MIEQAEAIDTRLQNAVDLGISGIDIMHGELKILMLVAEQELANAQAIEDETEEAMDSMERKYWEGVLDAYTELYKMTYDLSFAIGARNEA*
B570J40625_1000238036	F001781	GGAG	MKPEDKDKLNECLKILDTTDLGLSLVWLWTWSTINNIFEDETYKQNCTIDEMWDHLCEAVEAGMGFSLEYGAEQHNDDVLEWMLNRDYIVDSMFEEEEEDEDATD*
B570J40625_1000238037	F000441	AGGAGG	MQQTDKYINEQLSKAQALLWSGSLHEQDEAHNIIAKLINDRMGKAEGQND*
B570J40625_1000238039	F024786	GAGG	LPTYRIFGTKYINYYTVLDAADEYEAVDLANSLPETAWNLVESDDVIEATDIYLNEDTSIDLQLNI*