Scaffold B570J40625_100023539

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100023539
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10185
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034165	Metagenome / Metatranscriptome	175	Y
F056554	Metagenome / Metatranscriptome	137	Y
F090310	Metagenome	108	Y
F098561	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_1000235392	F098561	AGGAG	VAITLGKDCSIMLDGGYIASARNVTLTESARTIDVNPYGSRYAATYSTGYDCAVSVELNNVSDLGTAFEKMHTGGTFTVYGGAAGFSFLAVMTGISESDPIDGVATFTLEGRMTDPRLAR
B570J40625_1000235393	F056554	AGGA	MAISLGKDAASAPPFGEGIISASFTEECETIDISNRSNVGGSAGAPGRRVSRAGFVTKTWEIECHDPDGLITSLTAAGTSGSFSIMSVSENIGVDGAVTYNVTAKEF*
B570J40625_1000235394	F034165	GAGG	MPIGSVEITLGKDVTITGVANARSCTVTNSASDVDVTKFGDTSRKFRKALIEQTIELECVDAPGVSIGGTFTISGTQTGNATYICTNIAQSQPLDGIITFTVSGSRTVSA*
B570J40625_1000235396	F090310	N/A	MSSTLRALADSLATGLQSVTWGITSTVVERKNWANVDVDAMASPRVFVIPGSADVTRISRQMMQVDYTVSVFVGRHVSTDADVDGMLDLADSVMLQVRAHSFGAGVTWPAGVTSPQAVGIDLNPDDALTERNVWRAVITATYRVFETNVLPTPTV*