Scaffold B570J40625_100023522

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100023522
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10191
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (9.09%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014974	Metagenome / Metatranscriptome	258	N
F023343	Metagenome / Metatranscriptome	210	Y
F033400	Metagenome / Metatranscriptome	177	N
F046321	Metagenome / Metatranscriptome	151	N
F055719	Metagenome / Metatranscriptome	138	N
F058995	Metagenome	134	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10002352211	F023343	N/A	MSIKFNNVNSASFGLNDFKEEMAMMMFGRSFALAQAGKQCVICGKRAEFFSCDRAAREFKISSMCEPCQNEVFESMEDEG*
B570J40625_10002352218	F033400	N/A	MNTADNIDNSFFTYKFDGKKVKTNKLVKNLNDDIALTQAINLFREQNNMTKARNPYSWWKYVLATITYFPKGVEYITVINILNDIAGVNVSKSTATLLARATAGAAPCVVRREYTVRLPDLAYNTKLTASFSRKTAKTKKGRPAFQFKFANTKDARDTILSSAPEMKPLFDLLDKKIVE*
B570J40625_10002352220	F014974	AGGA	MIKLKDLLLENDDIFIPRRIEDRQTKYNNITQKEVNTIIDDFIDKRYNISLMLSPKDIDDEGYEYGTLQHNGEFVIPDKLKHIPSNLLLNNSNVTKLPDNLTIGGDVLSVVGCYKLHQLPKGLEVEIVEAASSGVRVIPDDIECDRLNLDSAAYITELPLFKHYIETINLLSAVRFKTLPAKFTCGTLNICDTIVEHIPSDVKIKYLKASNCPRLVSIGNNCEIDNLILINSTIESIPTDIRCSNYLNIRNTPFVNKLLKEHGTSEKVMEELKRSYPYVNDFGI*
B570J40625_10002352222	F058995	N/A	EFIIPDTLKKVEGGLDLENSNVTKLPDNLTIGDYINDYSYSRLDISYCKRLKALPKGLKVARIDAYNNGLIEIPDDIQCIYLNLQYTRIKQLPLFKHFIKEIDLEGCRYFKTLPVGFTAGKVLIQESKSFVSVPNNVNIKELTVNECEKFTSIGSNCTIERLFIGYSCPNFITLPTDIKADLLNLTYINTPLRIQLFNKYKTKPKVLKALKIMYPNVKEFHIG*
B570J40625_1000235223	F055719	N/A	MNKMLQKIVTKYPWKCVDVSVYHNKANADKMLQQILTKWTGSNKTNKIKKKG*
B570J40625_1000235228	F046321	N/A	MNDDLSELLGKLVGYTIGVLVANGIIMWVYNMVVPDVFGFKPIGYWQLFGLYMVCHYLFKPHSYAKNKKD*