Scaffold B570J40625_100020379

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100020379
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11214
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (82.35%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F001507	Metagenome / Metatranscriptome	681	Y
F002515	Metagenome / Metatranscriptome	552	Y
F019324	Metagenome / Metatranscriptome	230	Y
F063623	Metagenome / Metatranscriptome	129	Y
F074868	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_1000203791	F074868	AGGAG	MTQVINIGLALGISGALENRIIHDFNNGGCKSTYGLSVSQRKALIKILFSANAPKCACVNCL*
B570J40625_10002037914	F002515	N/A	MKQRKTKDELRILMELRRSNAASPIPSKKKYNRKKCQSLMLELKKERE*
B570J40625_10002037922	F001507	N/A	MTTTYKPHTIEELITEIYEDNYSHFEFMTEMNGGDCDCSLHITMNTIVRYWGE*
B570J40625_10002037923	F019324	GGGGG	MLGYELSDQEDMVTAIQSALTTVNPDDDPWLYNNLRMAEQFLQGLWAEGYFD*
B570J40625_10002037927	F063623	GGA	MDKLQPRLQKAVDVGISGLDIIHGELKHMMLEAEEGLNIAQAEEDESGEAMDSMERKYWEGQLDALSIVYELTYKLSFAIGDKNG*
B570J40625_1000203794	F000447	AGGA	MGYVEIFRLDEQGAGWVDLSEATPDELLNIEIALFQEGAL*