Scaffold B570J40625_100019566

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100019566
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11531
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (25.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002708	Metagenome / Metatranscriptome	535	N
F011063	Metagenome / Metatranscriptome	295	Y
F013293	Metagenome / Metatranscriptome	272	N
F015718	Metagenome / Metatranscriptome	252	Y
F018350	Metagenome / Metatranscriptome	235	Y
F048122	Metagenome	148	N
F081250	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_1000195661	F011063	N/A	VIKLKDILLEGKPPTIFVPRRLEDRVERMIKNYIHNGYKGNLSLSGLNLTVLPEILKDID
B570J40625_1000195662	F015718	AGGA	VKIVPIIRDGKIVMGDINEQYPVTNVMWQYMDDMTLGEYLASLGVDYKSYGFIKGFPRSFYLRIGFYEPGYVITTNSHLYDSLVTVRDNDPWHRKFKVFPVGSNLYGNDVYYYFSLMAKGLSSYGNDIYNCYVHVTTVNGKSVYCVDVLN*
B570J40625_1000195663	F081250	N/A	MPRVAKENALSSNAKDVWDMYAKGGKLDNEKIAKTLGINVDTVKKIIDICEKKFLENKTVIQIANEMKLTDYTIMQVLNNAIPDWKRTRDVNFTKDAEEIYNLHKQEKNPDEIVNLINQNRERHLQIKLDKVNLVLKIVDIATKQMENDGQMNAHEIERQINRDKDINVIIRLIKKLGIGKIKYKHKFTEEQDAFILFNYLQKIGLSELTRKFNEKFSTESKKLNIGVGSIYGRLKDTILKSNFESEISEYALNLIRDYKIEYFSTVNIEDPKTKELLKNYTPPETIKGKDKTGTGTNRDMSAHLGTVQPNFNTMVTNLRNAHTIR*
B570J40625_1000195665	F048122	AGGA	MLYMNKQVLMEVKDKLKRMIREVLLEENWTNWSLIIDKSGKIHDCGMDHGGWLMYNWKPKMDPIYRINVQSHGDDEQLLYVDERANSGILRKKLVAFAEDNGIKSIVWTNSVTNRGRLEQL*
B570J40625_1000195666	F018350	N/A	MTFKEIINKYPIVNTDWECNHNHIGSMSHRIMAVTGIDSYNGMKQFHQYLGISGYFSRTRVDDGSGVIFNSDPWMREFKMYYTRGGIKNGIYECKRIDGVNGGNDVYIMVTSVEGSRVWCMDVFER*
B570J40625_1000195668	F013293	N/A	MIDTASDLTNLITVNFTETMTPEIELTEAELEAMDDIRVQDELSATVAELPVTTEEQLARYNEKMDFLASIRAEIPALNVVEETTEESYAVPSGRYDYVYSMGTI*
B570J40625_1000195669	F002708	N/A	MKKLQKEFTANYDKVGNNKFIQIKKENGVAIYERQNMDGSHRSYEVFAVKVVEKGTPLPGGNKVQETYEQYPGCAAFGKTAYDCKTIDTAEKRFDELVKKVKDSADAKEQAAKTGIPVKRGRKASAKMNVKMPLNKGSKFTISMLTTYTGIDTVYIRKAVKEWLNDGVISINGSVKNETGRGKPSIEYVVV*