Scaffold B570J40625_100018995

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100018995
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11751
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (24.24%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001754	Metagenome / Metatranscriptome	641	Y
F003291	Metagenome / Metatranscriptome	495	Y
F005389	Metagenome / Metatranscriptome	402	Y
F007690	Metagenome	346	Y
F017485	Metagenome	240	Y
F017998	Metagenome	237	Y
F018001	Metagenome	237	Y
F031098	Metagenome / Metatranscriptome	183	N
F037728	Metagenome	167	Y
F038234	Metagenome	166	Y
F062757	Metagenome	130	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10001899510	F031098	AGTAG	MKTYYDIAIHTASKDVVNIKGVSYSQMMKIANDNPNLEKIEILKEYEKKTYR*
B570J40625_10001899515	F003291	N/A	MSTNQMNEKLVSVFNQDELAALMTAMAGYINVKRKQGRSTGIESVVFNKVTDALLLSNYMNATVIDCGNGKMGVAEYKMSEAQYDAMYESDVRAHS*
B570J40625_10001899516	F001754	GGTGG	MTLSLCSKGDGKIPPYQMIKNYNMNTIYNNFAPSKMSNNPKFSVMVEFTDFLGNQHRIVCNNRRKLAEANEFLKMFKSESTKINKILGEYPVVMGQFPKKYHKEIKMELASAGFSKVSNFLIK*
B570J40625_10001899518	F005389	N/A	MANKSKKSAKRTNLYETVSNNIQKITRPSGTVSYRVRVSEDGQMFSQYETSLKKAKALRNSWVG*
B570J40625_1000189952	F007690	AGG	VDDIDKLNNMLTIKNILKLQGQPLVDGWETNNIYEGNHNDTYIFELVKRKPYPIHNELCTIMLERTGHKIFGQPGFSYFFIYNSMRTNISASADWLADKDNMIERLEYMIMNKENL*
B570J40625_1000189953	F018001	N/A	MLTIQNIGDLNGAQLNDWKVLTAGEDNRPELGKNIYIITFARMDNTGVMLDDRAGVIIDRNINPLLKGYHIKVVYESWDYEIHTTTWPALTIKGKDAFFGMILYRINEEYYKRNSK*
B570J40625_10001899530	F017485	N/A	MNNELKTKDILEGITFILMIVATIGMYCLLYEVKELRELTKSATNFRTIRK*
B570J40625_1000189955	F062757	N/A	MLHIQNIRKLGGRRLFGGWIITAVGGNPNEPQYLFDIHCNGPIGNRIDGCTISLNRIGELQRNMFKPDTTAYFLYYNGERTDVCVTKDWILNPENFISQLKYIIKEYHNKK*
B570J40625_1000189956	F038234	N/A	MLTIKNIDSLKGTYIGHWKIHYVAKLQNSYLIKVVHNGSPFDMFNLMIGRVKTSNGDYLMYCQETDNRHYLPIESIKNSYTFIRFLIDELI*
B570J40625_1000189957	F017998	N/A	MNLERLDLEKYEVLEQERNNTIADPLYQQWMSELGVSSSYSDREGIIRANELNNQYTYSVLAGNKSTKFSVSSILSILR*
B570J40625_1000189958	F037728	N/A	MKRLEIKNFDKAVMDIYSDFFEVKHCSDRGDKYIMSIDTNDVVSFKRLEPKHYKMAIDKAPNEDGNYHIWLWDMGLNISYPMSIERDELSNSSTFTTFLNHMLKVANRGEFSGDVGNRIDNK*