Scaffold B570J40625

Basic Information
Taxon OID	3300002835 Open in IMG/M
Scaffold ID	B570J40625_100017685 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002835 Open in IMG/M

Scaffold ID

B570J40625_100017685 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12294
Total Scaffold Genes	32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (62.50%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

12294

Total Scaffold Genes

32 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

20 (62.50%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.099444	Long. (^o)	-89.404444	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.099444

Long. (^o)

-89.404444

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000684	Metagenome / Metatranscriptome	938	Y
F004132	Metagenome / Metatranscriptome	451	Y
F007112	Metagenome	357	Y
F021288	Metagenome / Metatranscriptome	219	Y
F034573	Metagenome	174	Y
F084233	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10001768510	F034573	AGGAG	MYRVSRKQIVTKEEKAAIAMGKILSDFYLDLEKVGYYLAKSVPYLIYKRSLSVLESAQFQEDTVEHEKLKYDQRRLP*
B570J40625_10001768513	F007112	GAGG	MHTLQYIAVEADSKQEAFDKVVVSLDRNEEGYRMPDWSDWHVVGGGRWSTNAQKSPDFMGGYNNDPTDVLGYAEDESKFKETLTQIRLNKAQAMNRNIVEIKTDKFISDMVDYASEGGRPSNEWRGDDVMNTYSIKQAAQMLMGSWTPDSGAYDMVEYIAEVSYLQERLDKPEQAVRQYLVPVDFHF*
B570J40625_10001768518	F021288	GGA	MLGYTQRDLADMTYGVSQADLLINADENPAIHNYLVKARDFLDGLWAEGYFD*
B570J40625_10001768520	F084233	N/A	MTLNVQIYEVDYSCSPGGVNCWEVSVDDWCVSDFKTAGDALQYVLDKYPYKELDLNVRSLNWYFKEFADEYAV*
B570J40625_10001768523	F004132	AGGA	MSDVMTQEQLSVPYNPNLLVTYKYIPETYAAPESPTFMTDKVTQIEWDLHQGRTYAAVAAEARSNHSWLEDQIVEWYDPNYSKEEVLIALAKHFGLNPVKQVEVQGTVSFSGTINIPLNEIEDFDLSNVTIDVDLSSYDYDADLNVDDVSLEDHY*
B570J40625_10001768524	F000684	AGGA	MTLGGYTYQLGDLFTTSKTGITGRIVKFSPINSKTTRVSLQLANGARRLAMVSTTK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold B570J40625_100017685

Overview

Ecosystem & Geography

Associated Families

Sequences