Scaffold B570J40625

Basic Information
Taxon OID	3300002835 Open in IMG/M
Scaffold ID	B570J40625_100017603 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002835 Open in IMG/M

Scaffold ID

B570J40625_100017603 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12334
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (37.50%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (14.29%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

12334

Total Scaffold Genes

24 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (37.50%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (14.29%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.099444	Long. (^o)	-89.404444	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.099444

Long. (^o)

-89.404444

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006546	Metagenome / Metatranscriptome	370	Y
F009402	Metagenome	318	Y
F020140	Metagenome / Metatranscriptome	225	Y
F025688	Metagenome / Metatranscriptome	200	Y
F053245	Metagenome / Metatranscriptome	141	Y
F063489	Metagenome / Metatranscriptome	129	Y
F068462	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10001760315	F063489	N/A	MNKKYIVRDRHGAYQSAYNLVFGKKKAYDWAMQCAKSVNGVIYLVDDDSNQEEEVFRVSDYKRN*
B570J40625_1000176032	F006546	N/A	MKWKYIGNRTGDATKGEVYIVEIYDAMEKYAKEDMPQFINVIVIQPPTPRNNLLRMKVGDTIKICNPYYEMMKYSHPGFVPVKE*
B570J40625_10001760320	F020140	N/A	MTHKFAIVVDRNFYDKVQYNNDFYLRVLVLDVVRALVPDEESVDKYSSDIFYKCAKSIAGEVKVFEDENSVIFYLELSSGYLDDFFEKPLDDLE*
B570J40625_10001760322	F025688	AGAAG	MKFILNIDGTNNGGKFLENYIGQTVDIESLYKDIDINSPPLATLKTEDNKQHSIQLIDVRFIGENVFIQCFVIQHDDKHGGKALLRLKPVVNLVKVVNP*
B570J40625_10001760323	F053245	N/A	MKHVTVKIGDKDLEDLSEIFKNEANFKPQAKQDLLIIEILRQVLNNPKMNITEEVDL*
B570J40625_1000176035	F068462	N/A	MSDITYTWKVNNVKCYKDLNGYQDYVYQTYWNCAAATLGATGQAYDSSFAGATPLGTGAASVTGYAFKPFVDLTQDDVLNWIWASLPSGAGKEYYEQKVSGELVYKMTYVTEEPALPWNPPAPTGTP*
B570J40625_1000176036	F009402	N/A	MKKLDKTFTSNGFEFKQIHRENMYAIYERKYIDSKSDPHYEAIKIQSHDGMVIAGNKIPPSEYYPSSNSWGRHGHTCVSRKAAYDRLDIMMKEELINKEAANKKAERQKSK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold B570J40625_100017603

Overview

Ecosystem & Geography

Associated Families

Sequences