Scaffold B570J40625_100016907

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100016907
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12653
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (92.59%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002540	Metagenome / Metatranscriptome	550	Y
F015583	Metagenome / Metatranscriptome	253	Y
F017816	Metagenome	238	Y
F083632	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10001690716	F017816	AGG	VAPWLIALTGGIYLVVAADLALHGKAGLGLAYLGYAFANVGLYLAARTP*
B570J40625_10001690717	F015583	AGGAG	MRFAFVVFLALAASCAYGQTIVVRGPAVISAQEHATVIARRGALVHSQCSQTEGIGMGSTPEAARRNCCFFGKKVIVEEGVAYSPVTRRWYAVIRYR*
B570J40625_1000169074	F083632	AGAAGG	VSLEDLDAAVWSSLSARKHLAGKPLVSRLVRRVVRKWPAVAISQARPDSYGVMLEQVAASIERSERQNVRMGIILSLVLGVLIQEIVKAVLAWWMKSASHRISLVGWQTEMRR*
B570J40625_1000169079	F002540	AGGAGG	MTLPNYQGTAEEYAKYGNSLSIWQQLALLQAWAPLIGYGQRFVNEADPYRRGLVVSDAAEWLASKTNSQADDQLVRLLADILKTPQGEALVRWCLLKAEGAK*