Scaffold B570J40625_100016459

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100016459
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12866
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (9.09%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002303	Metagenome / Metatranscriptome	573	Y
F005090	Metagenome / Metatranscriptome	412	N
F007751	Metagenome / Metatranscriptome	345	Y
F010084	Metagenome	308	Y
F011075	Metagenome / Metatranscriptome	295	Y
F027843	Metagenome	193	Y
F028510	Metagenome	191	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10001645920	F007751	N/A	MNKIEELKSVIGKDVSQNFSPTCRARLVKVNKVNSTFESVPSPYNKFPKPEFVGVKYKVPNWIAWNSFFY*
B570J40625_10001645924	F027843	N/A	MQIEFLNANGSLWIVKRKFKADSWFVQGIFANKFTVEEVCERYHVEKLLRGPDDTHYLVNEVPEAEIVID*
B570J40625_10001645928	F002303	N/A	MDIREQCRERAIEFAKEWNCDNVSNHILDIMVSIMCTRDKSSYAGGGFVEAVVSNNLYLAMSRADTDCRNNIFLLTMCKANCFIQN*
B570J40625_10001645929	F005090	N/A	MKKKIKFLWCGVNFELPAECLRTTDYWGKTLDNPYISIGRKECPAIAKQFMKAKYPHLLVWGSSETFANGNSATINVCNADGSDLNVASKEWNDIYTFVRQMSAGRYDGWSESYEYGEPGKSDNGTKLDFGTKYLHIENKAPFGTWPDVVRMLKAMMAGEYVWGPISLDKAIEKVRGYKITEPTIKKALELI*
B570J40625_10001645931	F011075	N/A	MSNFETHLGIIVGSHLNDAMIEVSINPQLAKKRLKFVKALTFFNEDLTKGVTDDYCDWLWNELFENQRWGGPYIKGTNYETKK*
B570J40625_10001645933	F010084	N/A	VSPIDGIGVFAIKDIKKDEQVFPIWEGESFMYIIPNERLSDIPNAVLELLDMYFINDDLGFKIIRLFKGMNFLFHGTSFCNSAYPSKENTNVDITGIALRDIKAGEEILEWYTQNLNLEN
B570J40625_1000164597	F028510	N/A	MGNVFKQRTYECKCGAITKEYGWDNELEKTKVKCNDCSKLLNRKNLVKVNWAASIRTPTKNR*