Scaffold B570J40625_100016228

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100016228
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12980
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (62.79%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008402	Metagenome / Metatranscriptome	334	Y
F008943	Metagenome / Metatranscriptome	325	Y
F018913	Metagenome / Metatranscriptome	232	Y
F047662	Metagenome / Metatranscriptome	149	Y
F071163	Metagenome / Metatranscriptome	122	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10001622810	F018913	AGCAG	MTNQQKAEELLKVFWESQAHNPAWLLQETLQQLRKQLSGTNKIDFTDELDVMFNAGWDECLKEIDAICDELELL*
B570J40625_1000162282	F047662	N/A	MHYETDIIIHQYSSDGDFYYKLKVTDVMNMDYYYDGSASTLDDVMECIQLHLKQHQN*
B570J40625_1000162283	F008402	N/A	MIDITTQIRIQNHADYWYTAEDLNVDLGCEGFTVSYWEIRKGEGDKRVNFIIMDKEEALALADAIYKLFKN*
B570J40625_1000162285	F071163	GGAG	MTKTQSALERVIIELDSWCDNWTPTSYNDPRISLRQIADRARDVLDPRKKK*
B570J40625_1000162288	F008943	AGGAG	MKFDGFDWVFLTIPIFIIVAAAAVLTYGDQQQRVLFQQTYNKNLECRQALKDQTVGRVNEICGDVPAIGAFVK*