Scaffold B570J40625

Basic Information
Taxon OID	3300002835 Open in IMG/M
Scaffold ID	B570J40625_100015727 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002835 Open in IMG/M

Scaffold ID

B570J40625_100015727 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13225
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (47.37%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

13225

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (47.37%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.099444	Long. (^o)	-89.404444	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.099444

Long. (^o)

-89.404444

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001272	Metagenome / Metatranscriptome	733	Y
F004664	Metagenome / Metatranscriptome	428	N
F012040	Metagenome / Metatranscriptome	284	N
F015354	Metagenome / Metatranscriptome	255	Y
F017632	Metagenome / Metatranscriptome	239	N
F032582	Metagenome	179	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10001572711	F032582	N/A	MKLQLEKTPCFIVSKPESEKERRCIRYMKTFGIDAVPVYGFRAENCGISTDYYHTREKEKAKVKTIVAGLSHFSVWSAIKWMVESKVTDHRTFLIVEDDVEFTCADWKSKLADNLDYLPSDWHVVYIGSCCADPIEDHGYIASNLYKLVRGMCTHAYLVNYEGVCKLLETNQKVWGPIDIQMLVDSMPRMNFYGILPRLATQENTKLYP*
B570J40625_10001572716	F004664	GGA	MSGYKILNEHNVIPGGWNYRVPETGIEIPAGSLPQLREFVRNHYAANAVKVPDNLDILITEYQCRNGADCSYDEVEIPKPKGLKSLQIGDVIRFSMSLIHGLTVGGGKVDQAEAIRRASICAGCQFNRKPLGCTGCNARVLKEAVRTLSQHGTTPLDDQLQSCEFCGCFIRSMVWFPIETLHKFTDATENANLPAHCWKKRPCTET*
B570J40625_10001572719	F017632	AGG	MSERAPRRYTDGSVTFDGGIDAGVMPSEVDKNQVAFAVNANFREGFISPRPGFIQKDYDLCVTVTADNAEITADQTNVTADGWSEECYGPQGLTGTFQCALPYISDDGRTFILLMISGKVWLYNCAQNNAQNLTTSPDLENPSNLLDGWMVQ
B570J40625_1000157272	F001272	N/A	MIKIELTTEQANTLLQLIDIAIKAGGFQNAKVGVPLAELILEAAKSSQQIEIAK*
B570J40625_1000157274	F015354	N/A	MNPNLTSLIRHLLSAAGGFLVAKGLASADQVAELAGATVSIIGVAWSIFNNKSKKAESEKPE*
B570J40625_1000157279	F012040	AGAAG	MINWLKGSTKTQKSDLKNLPDVNMADWMTSGESAEFSKLLQTPLLRMAIRIVAESMPVPMPSHGAKESDIIFAAGVTAGYAHCLENLRKLSVNETTKEPEATFEKQY*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold B570J40625_100015727

Overview

Ecosystem & Geography

Associated Families

Sequences