Scaffold B570J40625

Basic Information
Taxon OID	3300002835 Open in IMG/M
Scaffold ID	B570J40625_100015342 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002835 Open in IMG/M

Scaffold ID

B570J40625_100015342 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13430
Total Scaffold Genes	42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (47.62%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

13430

Total Scaffold Genes

42 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

20 (47.62%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.099444	Long. (^o)	-89.404444	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.099444

Long. (^o)

-89.404444

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000345	Metagenome / Metatranscriptome	1253	Y
F000744	Metagenome / Metatranscriptome	909	Y
F003331	Metagenome / Metatranscriptome	493	Y
F004546	Metagenome / Metatranscriptome	433	Y
F004898	Metagenome / Metatranscriptome	419	Y
F007569	Metagenome / Metatranscriptome	348	Y
F085168	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10001534213	F085168	AGTAGG	MIRKIRILLWKIVSDWEQRLYPYEKEDTGDYYYTVKNEETGESYMIIEWIKSFDERIQRLQDEMLWVLTEIRELKK*
B570J40625_10001534223	F000345	N/A	MEENKKNDLGKSLQKWWDSDDFKKLQKDLEESKQRAVGKYFMLSESDKLDMVQAICYIMCKAEKEGCSHRGLQDELGIYPAGFWIDHLMDVHNALWSFFHDQKNEKDLKDDLDRLDDFIK
B570J40625_10001534234	F004898	AGG	MDLSELIEELREIEIYGSEPADWMGYLYDDDSWVPDHELAY*
B570J40625_1000153424	F003331	N/A	MTEKDKIFHNVWCCAYRRRYAAKLKQDWELYKREHQTLLMCLKIAKWTTFDSEKPHYLK*
B570J40625_10001534242	F000744	GGA	MGEITVNLNVHEMGVILSALQNLENVDEHRIAREYGSVPALYDKLYSYWEQMDRSQTGIRNDVVPSF*
B570J40625_1000153428	F007569	GGAG	MNFTPEQYKLIFTAVRRYQFEKTVLDSKEYHQCGEILDELFDSVYTQRVEKPT*
B570J40625_1000153429	F004546	GAG	MDYTEDFPFDQFPWKLVHKEGKETRKCYFQTEDHMKKHIARYNLKKKDYTIGYKYSEEK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold B570J40625_100015342

Overview

Ecosystem & Geography

Associated Families

Sequences