Scaffold B570J40625_100015069

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100015069
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13566
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (81.25%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000808	Metagenome / Metatranscriptome	882	Y
F001460	Metagenome / Metatranscriptome	690	Y
F001781	Metagenome / Metatranscriptome	635	Y
F005745	Metagenome / Metatranscriptome	391	Y
F007363	Metagenome / Metatranscriptome	352	Y
F017484	Metagenome / Metatranscriptome	240	Y
F023344	Metagenome / Metatranscriptome	210	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10001506911	F000808	GGA	MEYNYSLTVSYDGKLFGAYRYTDMLEAVDAWNKCVDFGDAKEYATYNLSDPMGKMYTKNFYRNGEVNGK*
B570J40625_10001506919	F023344	AGGA	MAVEMFTDSLGEHIMGAIQVDIEEHLFEQWNNTNLDEGVEYAEWQFLQFAPDSVKQSYNEYYGYTEKDEYYLC*
B570J40625_10001506920	F001460	GAG	MLGYQQEDLDRMINAVHDAKLFYLRHPSDLMDKTQLRSDLEDTVSFLQGLWAEGYFD*
B570J40625_10001506922	F005745	AGG	MIELETLEPHLQRMVDHGVNGLDIMHGELKNLMLVAEAQLEEAKRIEEENDYSDAMESMERKYWEGVSDAYTSLYKLTYDLSFAIGARNEA*
B570J40625_10001506923	F001781	GGAG	MKPDDKDKLNQCLDILDTTDLGLSLVWLWTWSTIKNFMEDDESFKMKCSEQEMWDNLCEAVSVGHGFSLEYGAEQHHEDVMEWMLNRDYMVDTMFEEDED*
B570J40625_1000150693	F017484	N/A	MANLEIFEMNENGAGWVSLENASASTKLDLEIALLTKAEVKMLCFKCHIEIPRGNVCVNHKNVRGAVYFSE*
B570J40625_1000150699	F007363	AGGA	MRAYSIVDLLVDTYYAPQSLSRRFNGGIINHAEKREDVYPPEGYEAFAIRYRPTGRLNDQWATVAVRITDY*